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Before you start

Access to HPC

Gadi

Gadi User Guide/User Account and Project Memberships
The Australian BioCommons Leadership Share (ABLeS)

Setonix

Requesting Access to Pawsey Supercomputers
The Australian BioCommons Leadership Share (ABLeS)

Lyra

Start using the HPC

Access to the Australian Biocommons Nextflow Tower

The Australian BioCommons Nextflow Tower pilot project
User Guide for the Australian BioCommons Nextflow Tower Service

Other prerequisites

ONTvisc is a pipeline written in Nextflow; thus, a basic knowledge of this workflow orchestration engine is required. In addition, you need to know how to use a command line - create directories, navigate between the folders, execute commands, etc. It may be useful for launching the Tower Agent or when the pipeline needs troubleshooting.